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Paychex Cost Per Employee 2026: Monthly Estimates for Every Team Size

Paychex charges a base fee plus a per-employee fee each month. Use the calculator to estimate your exact cost, or find your team size in the tables below.

Paychex Payroll Cost Calculator

150100200
Base Fee
$39/mo
Per-Employee
$50/mo
Monthly Total
$89
Annual Total
$1,068/yr
Publicly priced.
Gusto Simple: $100/mo for 10 employees
Paychex costs ~$11/mo less than Gusto Simple at this employee count (essentials tier vs Gusto Simple).
Annual difference: $132/yr more with Gusto Simple

Pre-Computed Cost Table: All Team Sizes

Base fee + per-employee fee only. Does not include per-run fees, setup costs, W-2 processing, or add-ons. See hidden fees.

EmployeesEssentials/MoEssentials/YrSelect est./MoPro est./MoEnterprise est./Mo
1$44$528~$50~$79~$98
2$49$588~$53~$83~$101
3$54$648~$56~$87~$104
5$64$768~$62~$95~$110
10$89$1068~$77~$115~$125
15$114$1368~$92~$135~$140
20$139$1668~$107~$155~$155
25$164$1968~$122~$175~$170
30$189$2268~$137~$195~$185
40$239$2868~$167~$235~$215
50$289$3468~$197~$275~$245
75$414$4968~$272~$375~$320
100$539$6468~$347~$475~$395

How Payroll Frequency Affects Your Cost

Unlike Gusto (which includes unlimited payroll runs in all plans), Paychex charges per payroll run on most plans. The table below shows total estimated monthly cost for 10 employees on Essentials at different payroll frequencies.

Payroll FrequencyRuns/MonthBase + Per-EmployeeEst. Run FeesTotal/MonthAnnual Total
Monthly1$89$0~$89~$1068
Semi-monthly2$89$0~$89~$1068
Bi-weekly2.17$89~$15~$104~$1248
Weekly4.33$89~$50~$139~$1668

Per-run fee estimates for 10 employees. On Essentials, basic monthly runs may be included; on Select/Pro, per-run fees apply above the included frequency. Weekly payroll is significantly more expensive with Paychex than with Gusto.

How Paychex Per-Employee Pricing Works

Paychex uses a base fee + per-seat pricing model. The base fee covers the platform, tax filing infrastructure, and core processing regardless of how many employees you have. The per-employee fee scales with your headcount.

This model means Paychex is relatively expensive for very small businesses (1-3 employees) where the base fee represents most of the cost. It becomes more cost-effective as team size grows because the base fee is amortized across more employees. At 25+ employees, the effective per-employee total cost (including base fee allocation) drops meaningfully.

Comparison to flat-fee models: Gusto Simple charges $40 base + $6/employee with unlimited payroll runs. For 5 employees running bi-weekly payroll, Gusto Simple = $70/month. Paychex Essentials = $64/month base but adds per-run fees if running bi-weekly on some configurations. The total cost difference narrows significantly when per-run fees are factored in. Full Gusto comparison.

Frequently Asked Questions

How much does Paychex charge per employee per month?
Paychex Flex Essentials charges $5 per employee per month on top of the $39 base fee. Select is estimated at approximately $3/employee/month, Pro at $4/employee/month, and Enterprise at $3/employee/month. These per-employee fees do not include per-run charges which apply on some plans when running payroll more than once per month on Select or Pro configurations.
How much does Paychex cost for one employee?
For a single employee on Paychex Flex Essentials, the monthly cost is approximately $44/month ($39 base + $5 per employee). Annually that is $528. At this team size, Gusto Simple at $46/month ($40 + $6) is very comparable. If you're a solo business owner, consider whether payroll software is necessary or if quarterly estimated taxes and annual filing may be simpler.
How much does Paychex cost for 5 employees?
For 5 employees on Paychex Flex Essentials, the monthly cost is approximately $64/month ($39 base + $25 per-employee). Annual cost is approximately $768/year before setup fees ($150-$500), year-end W-2 processing ($10-$25), and per-run fees on non-monthly payroll. At 5 employees, Essentials is competitive with Gusto Simple ($70/month) and QuickBooks Core ($75/month).
Does Paychex pricing per employee decrease as you add more staff?
On Essentials, the per-employee rate stays flat at $5/employee. On Select, Pro, and Enterprise (all quote-based), per-employee rates do decrease as headcount grows - this is part of Paychex's negotiated pricing model. Enterprise clients with 200+ employees typically pay $3-$4/employee/month. If you're growing fast, it's worth getting a Select or Pro quote once you pass 15 employees.
Related Pages
Hidden Fees ExplainedFlex Essentials & SelectFlex Pro PricingPaychex vs GustoFull Pricing Overview